Publications

Publications

Aubin*, E. C. Troisi*, J. Montelongo, A. N. Alghalith, M. P. Nasrallah, M. Santi, and P. G. Cámara.Pro-Inflammatory Cytokines Mediate the Epithelial-to-Mesenchymal-Like Transition of Pediatric Posterior Fossa Ependymoma.Nature Communications 13 (2022) 3936

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Yang, Z., Nasrallah, I.M., Shou, H. et al. A deep learning framework identifies dimensional representations of Alzheimer’s Disease from brain structure. Nat Commun 12, 7065 (2021). https://doi.org/10.1038/s41467-021-26703-z

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Macyszyn, L, Akbari, H, Pisapia, JM, Da, X, Attiah, M, Pigrish, V, Bi, Y, Pal, S, Davuluri, RV, Roccograndi, L, Dahmane, N, Martinez-Lage, M, Biros, G, Wolf, RL, Bilello, M, O’Rourke, DM, Davatzikos, C. Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques, Neuro-Oncology, Volume 18, Issue 3, June 2015, Pages 417–425, https://doi.org/10.1093/neuonc/nov127

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Zhang, L, Ding, X, Ma, Y, Muthu, N, Ajmal, I, Moore, JH, Herman, DS, Chen, J, A maximum likelihood approach to electronic health record phenotyping using positive and unlabeled patients, Journal of the American Medical Informatics Association, Volume 27, Issue 1, January 2020, Pages 119–126, https://doi.org/10.1093/jamia/ocz170

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La Cava, WLee, PCAjmal, IDing, XSolanki, PCohen, JBMoore, JHHerman, DS. Application of concise machine learning to construct accurate and interpretable EHR computable phenotypes.

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Zhou, Y, Petrovic, J, Zhao, J, Zhang, W, Bigdeli, A, Zhang, Z, Berger, SL, Pear, WS, Faryabi, RB. EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells. Mol Cell. 82 (5) P1003-1020.E15, MARCH 03, 2022. DOI: 10.1016/j.molcel.2022.01.015

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Schwartz, G.W., Zhou, Y., Petrovic, J. et al. TooManyCells identifies and visualizes relationships of single-cell clades. Nat Methods 17, 405–413 (2020). https://doi.org/10.1038/s41592-020-0748-5

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K. W. Govek*, E. C. Troisi*, Z. Miao, R. G. Aubin, S. Woodhouse, and P. G. Cámara. Single-Cell Transcriptomic Analysis of mIHC Images via Antigen Mapping. Science Advances 7 (2021) eabc5464. DOI: 10.1126/sciadv.abc5464. [*authors contributed equally].

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Cui, Z., Li, H., Xia, C.H.,… Satterthwaite, T.D.  Individual Variation in Functional Topography of Association Networks in Youth. Neuron. Volume 106, Issue 2, 22 April 2020, Pages 340-353.e8. https://doi.org/10.1016/j.neuron.2020.01.029

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Cieslak, M., Cook, P.A., He, X., Satterthwaite, T.D. QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data. Nat Methods 18, 775–778 (2021). https://doi.org/10.1038/s41592-021-01185-5

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