Publications

Publications

Aubin*, E. C. Troisi*, J. Montelongo, A. N. Alghalith, M. P. Nasrallah, M. Santi, and P. G. Cámara.Pro-Inflammatory Cytokines Mediate the Epithelial-to-Mesenchymal-Like Transition of Pediatric Posterior Fossa Ependymoma.Nature Communications 13 (2022) 3936

Yang, Z., Nasrallah, I.M., Shou, H. et al. A deep learning framework identifies dimensional representations of Alzheimer’s Disease from brain structure. Nat Commun 12, 7065 (2021). https://doi.org/10.1038/s41467-021-26703-z

Macyszyn, L, Akbari, H, Pisapia, JM, Da, X, Attiah, M, Pigrish, V, Bi, Y, Pal, S, Davuluri, RV, Roccograndi, L, Dahmane, N, Martinez-Lage, M, Biros, G, Wolf, RL, Bilello, M, O’Rourke, DM, Davatzikos, C. Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques, Neuro-Oncology, Volume 18, Issue 3, June 2015, Pages 417–425, https://doi.org/10.1093/neuonc/nov127

Zhang, L, Ding, X, Ma, Y, Muthu, N, Ajmal, I, Moore, JH, Herman, DS, Chen, J, A maximum likelihood approach to electronic health record phenotyping using positive and unlabeled patients, Journal of the American Medical Informatics Association, Volume 27, Issue 1, January 2020, Pages 119–126, https://doi.org/10.1093/jamia/ocz170

La Cava, WLee, PCAjmal, IDing, XSolanki, PCohen, JBMoore, JHHerman, DS. Application of concise machine learning to construct accurate and interpretable EHR computable phenotypes.

Zhou, Y, Petrovic, J, Zhao, J, Zhang, W, Bigdeli, A, Zhang, Z, Berger, SL, Pear, WS, Faryabi, RB. EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells. Mol Cell. 82 (5) P1003-1020.E15, MARCH 03, 2022. DOI: 10.1016/j.molcel.2022.01.015

Schwartz, G.W., Zhou, Y., Petrovic, J. et al. TooManyCells identifies and visualizes relationships of single-cell clades. Nat Methods 17, 405–413 (2020). https://doi.org/10.1038/s41592-020-0748-5

K. W. Govek*, E. C. Troisi*, Z. Miao, R. G. Aubin, S. Woodhouse, and P. G. Cámara. Single-Cell Transcriptomic Analysis of mIHC Images via Antigen Mapping. Science Advances 7 (2021) eabc5464. DOI: 10.1126/sciadv.abc5464. [*authors contributed equally].

Cui, Z., Li, H., Xia, C.H.,… Satterthwaite, T.D.  Individual Variation in Functional Topography of Association Networks in Youth. Neuron. Volume 106, Issue 2, 22 April 2020, Pages 340-353.e8. https://doi.org/10.1016/j.neuron.2020.01.029

Cieslak, M., Cook, P.A., He, X., Satterthwaite, T.D. QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data. Nat Methods 18, 775–778 (2021). https://doi.org/10.1038/s41592-021-01185-5